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How do spectroscopy and chromatography let us determine the structure of an unknown compound?

Proton and carbon-13 NMR spectroscopy, chemical shift and splitting, combining spectroscopic data to determine structures, and chromatography (TLC, gas and HPLC) for separation and analysis.

An Edexcel 9CH0 answer covering proton and carbon-13 NMR, chemical shift and splitting, combining spectroscopic data to deduce structure, and chromatography techniques.

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  1. What this topic is asking
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What this topic is asking

Edexcel Topic 19 wants you to interpret proton and carbon-13 NMR spectra (chemical shift, integration and splitting), combine NMR with mass spectrometry and infrared data to determine a full structure, and describe the principles of thin-layer, gas and high-performance liquid chromatography for separation and analysis.

The answer

NMR spectroscopy

How NMR works

Certain nuclei (1H^1\text{H} and 13C^{13}\text{C}) behave like tiny magnets. In a strong applied magnetic field they can align with or against the field; absorbing radio-frequency radiation flips them between these states. Nuclei in different chemical environments experience slightly different shielding from surrounding electrons, so they resonate at slightly different frequencies, giving separate peaks. Samples are dissolved in a solvent with no ordinary protons, such as CDCl3\text{CDCl}_3, so the solvent does not swamp the spectrum.

Reading a proton spectrum

Three pieces of information come from each set of peaks:

  • Number of peaks equals the number of proton environments.
  • Integration (the step height or area) gives the whole-number ratio of protons.
  • Splitting uses the n+1n+1 rule: a singlet has no adjacent protons, a doublet has one, a triplet two, a quartet three. Typical shifts include R-CH3\text{R-CH}_3 near 0.90.9, O-CH\text{O-CH} near 3.53.5, and O-CHO\text{O-CHO} (aldehyde) near 9.7 ppm9.7\ \text{ppm}.

Combining data to find structure

Use the molecular ion from mass spectrometry for the molecular mass and fragment clues, infrared for functional groups (broad O-H\text{O-H}, sharp C=O\text{C=O}, N-H\text{N-H}), and NMR for the carbon and hydrogen framework. Together these usually pin down a single structure. A reliable order is: deduce the molecular formula (mass spec), identify functional groups (IR), then build the skeleton from NMR environments and splitting.

Chromatography

Examples in context

Example 1. MRI scanners. Magnetic resonance imaging is proton NMR applied to the human body: it maps the hydrogen nuclei in water and fat. Different tissues relax at different rates, giving contrast in the image. The technique is the same physics as bench NMR (nuclei flipping in a magnetic field) but tuned to produce a spatial map rather than a chemical-shift spectrum, which is why hospitals avoid the word "nuclear" to reassure patients.

Example 2. Drug testing by GC-MS. Anti-doping laboratories use gas chromatography coupled to mass spectrometry to detect banned substances in athletes' urine. The GC separates the complex mixture by retention time, and as each component leaves the column the mass spectrometer records its fragmentation pattern, which acts as a fingerprint matched against a database. This combination of separation plus identification is exactly the principle Edexcel asks candidates to describe.

Try this

Q1. State what the number of peaks in a carbon-13 NMR spectrum tells you. [1 mark]

  • Cue. The number of different carbon environments in the molecule.

Q2. A proton NMR peak is split into a quartet. State how many protons are on the neighbouring carbon. [1 mark]

  • Cue. Three (a quartet means n+1=4n+1 = 4, so n=3n = 3).

Exam-style practice questions

Practice questions written in the style of Pearson Edexcel exam questions on this dot point, with worked answer explainers. The year tag is the paper they imitate, not the source.

Edexcel 20195 marksA compound X has molecular formula C3H6O\text{C}_3\text{H}_6\text{O}. Its proton NMR spectrum shows two peaks: a singlet at 2.1 ppm2.1\ \text{ppm} (integration 66) and no other peaks. Its IR spectrum has a strong absorption at 1715 cm11715\ \text{cm}^{-1}. Deduce the structure of X, explaining how each piece of data is used.
Show worked answer →

Combine IR, integration and splitting to reach a single structure.

The IR peak at 1715 cm11715\ \text{cm}^{-1} shows a C=O\text{C=O} group (1). The formula C3H6O\text{C}_3\text{H}_6\text{O} with a carbonyl and no O-H\text{O-H} (no broad absorption) means an aldehyde or ketone (1). The proton NMR shows a single peak, so all six H atoms are in one environment (1); a singlet means no neighbouring protons on adjacent carbons (1). Two equivalent CH3\text{CH}_3 groups either side of a C=O\text{C=O} fit this: X is propanone, CH3COCH3\text{CH}_3\text{COCH}_3 (1).

Markers reward using each datum (IR, integration, splitting) explicitly and arriving at propanone rather than propanal (an aldehyde would show a low-integration CHO\text{CHO} peak near 9.7 ppm9.7\ \text{ppm}).

Edexcel 20224 marks(a) State what carbon-13 NMR tells you about a molecule. (b) Ethanol, CH3CH2OH\text{CH}_3\text{CH}_2\text{OH}, is run by proton NMR. Predict the number of peaks, their splitting, and the integration ratio.
Show worked answer →

Count environments for carbon, then apply the n+1n+1 rule for protons.

(a) The number of peaks equals the number of different carbon environments in the molecule (1).

(b) Ethanol has three proton environments: CH3\text{CH}_3, CH2\text{CH}_2 and OH\text{OH}, so three peaks (1). The CH3\text{CH}_3 is split by the two CH2\text{CH}_2 protons into a triplet (n+1=3n+1 = 3); the CH2\text{CH}_2 is split by the three CH3\text{CH}_3 protons into a quartet (n+1=4n+1 = 4); the OH\text{OH} is a singlet (it does not normally couple) (1). Integration ratio CH3:CH2:OH=3:2:1\text{CH}_3 : \text{CH}_2 : \text{OH} = 3 : 2 : 1 (1).

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